PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157693.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 369aa MW: 38555.7 Da PI: 8.5795

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157693.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.1	1.3e-37	95	168	5	77
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaes 77 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pa++++tgt++++a+++ ++s XP_019157693.1 95 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAVIAATGTGTIPANFStLNVS 168 899***************************************************************88843333 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MEFMEPHTHS SSSRNNNGAS SSDHHRPPPP QAQEPPPPPS SLQLVSHQSQ PDPPTHGPFI 60 GSISGKSART PTHPLLSPPP SNAANNSNSG NKLVKKPSKD RHTKVDGRGR RIRMPALCAA 120 RVFQLTRELG HKSDGETIEW LLHQAEPAVI AATGTGTIPA NFSTLNVSLR GGGTTISAPP 180 SKPAPLFIHG GGAAFHRHFS LTGGGVQDNE PGSDPKPASS HPSTFIPAPA MWAVAAPAAG 240 NAGNSFWMLP LSGGATSGTP TVAQPEQPHL WQYKGSGGFE FPGGRFSPVH LGAAQPVQQL 300 GLGVSESNMG MLPSAAAINA AAYTTSSNIK MVDLGMTLEQ HQHHGRHDNN QNQQPQGSDS 360 GGENPKDSE

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MEFMEPHTHS SSSRNNNGAS SSDHHRPPPP QAQEPPPPPS SLQLVSHQSQ PDPPTHGPFI  60
GSISGKSART PTHPLLSPPP SNAANNSNSG NKLVKKPSKD RHTKVDGRGR RIRMPALCAA  120
RVFQLTRELG HKSDGETIEW LLHQAEPAVI AATGTGTIPA NFSTLNVSLR GGGTTISAPP  180
SKPAPLFIHG GGAAFHRHFS LTGGGVQDNE PGSDPKPASS HPSTFIPAPA MWAVAAPAAG  240
NAGNSFWMLP LSGGATSGTP TVAQPEQPHL WQYKGSGGFE FPGGRFSPVH LGAAQPVQQL  300
GLGVSESNMG MLPSAAAINA AAYTTSSNIK MVDLGMTLEQ HQHHGRHDNN QNQQPQGSDS  360
GGENPKDSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	4e-54	TCP family protein