PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157738.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 214aa    MW: 23533.5 Da    PI: 7.3889
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.51.7e-232371149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krie ks r vtfskRr+gi+KKA+ELS+LC+aevav++ s+ g+++ +
  XP_019157738.1 23 KRIEAKSSRLVTFSKRRAGIFKKASELSTLCGAEVAVLVRSPAGRVFGF 71
                    79*******************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MAAMESQDKR NKGSKGKRKI EIKRIEAKSS RLVTFSKRRA GIFKKASELS TLCGAEVAVL  60
VRSPAGRVFG FGHPSIDAVI QRYENCGPGG DQCPDYCGGD EWVEGVETLA AEKEQLAEEN  120
RRQTAASSGG GGGERGMLWW AKDIDGMGLQ ELVEFRNSLV RLKNETEKKA KEMATKPAGF  180
SSSSHEEHEN VVPLSVDESN LLFPTSSDFR LWSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-22M-type_MADS family protein