PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157784.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 167aa MW: 18156.3 Da PI: 7.9252

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157784.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.7	2.7e-45	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+CakdCv+apyfpa++p+kfa vhk+FGasnv kll++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la XP_019157784.1 15 PCAACKLLRRRCAKDCVFAPYFPADEPHKFASVHKVFGASNVNKLLQDLPEHQRGDAVSSMVYEANARMRDPVYGCVGAISSLQQQVDVLQTQLA 109 7********************************************************************************************** PP DUF260 96 llkee 100 +++e XP_019157784.1 110 FTQAE 114 99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence
MKESWRKAGG AAASPCAACK LLRRRCAKDC VFAPYFPADE PHKFASVHKV FGASNVNKLL 60 QDLPEHQRGD AVSSMVYEAN ARMRDPVYGC VGAISSLQQQ VDVLQTQLAF TQAEVVHMRM 120 RQPFSSSNSP ENASPSSSRH AHTTHGGADP FGTDMAVDQS NAGDSFW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-52	LBD family protein