PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157885.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 258aa    MW: 28155 Da    PI: 8.1264
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll+++++++G g+W++ ++  g+ R++k+c++rw +yl
   XP_019157885.1 14 KGAWTKEEDQLLINYIRLHGEGCWRSLPKPAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding57.53e-1867110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++Edel+++++ +lG++ W++Ia++++ gRt++++k++w++
   XP_019157885.1  67 RGNFTQQEDELIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNT 110
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MGRSPCCEKA HTNKGAWTKE EDQLLINYIR LHGEGCWRSL PKPAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TQQEDELIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT QIKRKLISCG  120
IDPQTHRPLD ASAAAASCGG ATKPENISLD LSSSTPSQEE TKCSSGTTSE ESHHQPLKDK  180
QRNDEQMAGL DLSIGLALHP KTEDSADSTA SGGLLLVAPP PPAAVELSVT EAVCLCWQLG  240
SRSGGLCNKC HATKCFLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-89MYB family protein