PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157888.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 418aa MW: 45466.5 Da PI: 5.1382

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.3e-12	354	399	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + a++L +Av+YIk+L+ XP_019157888.1 354 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLE 399 689*******************7....688*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MDQRRYQQQQ QQMTSGLTRY RSAPSSYFAS YLNSNTSDTS GIGGGGGYAR DDFDQLLNAH 60 NSSSDVQQAF GRFMASLDSQ DMNSNRPGNS SSNLNVKQES DAYEQPPPQQ LPESGGDYGS 120 VSQMNYSGQA QQSHNSDATT TTTSAMEDSF GLMNSANPDR FRSPKMNTGV GNSNLTRYNT 180 SPAGFFAQFD IGNEYGAMRG MGSYGAGSNA NAEASFSSPS KFKNHTGFSS SGQPASSSGA 240 MASISEIGEE GLKEETSPGH GGFSETQKND EFSMPYWEDS DILSDLFLNG SEEKPFSNPN 300 VSDIQKSEDQ TRPPGLLSHH LSLPKIPAQL SAIMQDSVPC KVRAKRGCAT HPRSIAERVR 360 RTKISERMRK LQELVPNMDK QTNTADMLDL AVDYIKDLES QVQVLSENRA KCTCSSSK

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MDQRRYQQQQ QQMTSGLTRY RSAPSSYFAS YLNSNTSDTS GIGGGGGYAR DDFDQLLNAH  60
NSSSDVQQAF GRFMASLDSQ DMNSNRPGNS SSNLNVKQES DAYEQPPPQQ LPESGGDYGS  120
VSQMNYSGQA QQSHNSDATT TTTSAMEDSF GLMNSANPDR FRSPKMNTGV GNSNLTRYNT  180
SPAGFFAQFD IGNEYGAMRG MGSYGAGSNA NAEASFSSPS KFKNHTGFSS SGQPASSSGA  240
MASISEIGEE GLKEETSPGH GGFSETQKND EFSMPYWEDS DILSDLFLNG SEEKPFSNPN  300
VSDIQKSEDQ TRPPGLLSHH LSLPKIPAQL SAIMQDSVPC KVRAKRGCAT HPRSIAERVR  360
RTKISERMRK LQELVPNMDK QTNTADMLDL AVDYIKDLES QVQVLSENRA KCTCSSSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	5e-57	bHLH family protein