PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157890.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 417aa    MW: 45338.4 Da    PI: 5.0204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12353398655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR +i +++ +L+el+P+     +k  + a++L +Av+YIk+L+
  XP_019157890.1 353 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLE 398
                     689*********************7....688***************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    
MDQRRYQQQQ QQMTSGLTRY RSAPSSYFAS YLNSNTSDTS GIGGGGGYAR DDFDQLLNAH  60
NSSSDVQQAF GRFMASLDSQ DMNSNRPGNS SSNLNVKQES DAYEQPPPQQ LPESGGDYGS  120
VSQMNYSGQA QQSHNSDATT TTTSAMEDSF GLMNSANPDR FRSPKMNTGV GNSNLTRYNT  180
SPAGFFAQFD IGNEYGAMRG MGSYGAGSNA NAEASFSSPS KFKNHTGFSS SGQPASSSGA  240
MASISEIGEE GLKEETSPGH GGFSETQKND EFSMPYWEDS DILSDLFLNG SEEKPFSNPN  300
VSDIQSEDQT RPPGLLSHHL SLPKIPAQLS AIMQDSVPCK VRAKRGCATH PRSIAERVRR  360
TKISERMRKL QELVPNMDKQ TNTADMLDLA VDYIKDLESQ VQVLSENRAK CTCSSSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.11e-56bHLH family protein