PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157977.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 392aa MW: 45615.6 Da PI: 6.7077

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157977.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.7	1.1e-14	57	125	1	66
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkakl 66 +fY +YAk++GF+vr +++++ r ge+ + + Cs+eg+++e+k++ + ++rr+r+++r+gC+a++ XP_019157977.1 57 DFYIAYAKDAGFDVRHGSKRRN-RMGEVSIKYMLCSREGYKAERKDTnndsKARKRRRRVSNRIGCRARM 125 6***************9999.6677999999******99998988889999**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MDYTSPTQTG EDNCGHGIHE CQMEIGVDGP KYWRPATEKE KTPYEGQQFE AVDAGIDFYI 60 AYAKDAGFDV RHGSKRRNRM GEVSIKYMLC SREGYKAERK DTNNDSKARK RRRRVSNRIG 120 CRARMANIGP TKAFRLFKEM VGGFTDIGAT CIDFCNFRRD LLAYIAEADA QMVIEDMFKR 180 KEENPDFYFD FDIDEEAQLS RLFWADAESR RNYACFGDVM SFDATYSTNR YKLVFVPFTG 240 VDNHKRCITF GAGLIAKEDV ESYEWLVQKF KTAMEYTPRC TITDQDPALK IVMPQAMPTA 300 RHRFCMWHIM TKVGEKVGVA LWHNTDFNKA LNSTVWDDTL TIDEFKRKWD TLIKDYQLEE 360 HRWFAQLYEA RASWIPAYFN DIEMGGLLRT TS

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MDYTSPTQTG EDNCGHGIHE CQMEIGVDGP KYWRPATEKE KTPYEGQQFE AVDAGIDFYI  60
AYAKDAGFDV RHGSKRRNRM GEVSIKYMLC SREGYKAERK DTNNDSKARK RRRRVSNRIG  120
CRARMANIGP TKAFRLFKEM VGGFTDIGAT CIDFCNFRRD LLAYIAEADA QMVIEDMFKR  180
KEENPDFYFD FDIDEEAQLS RLFWADAESR RNYACFGDVM SFDATYSTNR YKLVFVPFTG  240
VDNHKRCITF GAGLIAKEDV ESYEWLVQKF KTAMEYTPRC TITDQDPALK IVMPQAMPTA  300
RHRFCMWHIM TKVGEKVGVA LWHNTDFNKA LNSTVWDDTL TIDEFKRKWD TLIKDYQLEE  360
HRWFAQLYEA RASWIPAYFN DIEMGGLLRT TS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	113	RKRRR
2	110	115	KRRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-54	FAR1 family protein