PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158063.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 387aa MW: 42460.2 Da PI: 9.0214

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	64.5	2.1e-20	13	58	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + XP_019158063.1 13 KGPWSPEEDELLQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58 79****************************.*********985 PP
2	Myb_DNA-binding	52.5	1.1e-16	67	109	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ XP_019158063.1 67 AFTPEEDDTIIRAHARFGNK-WATIARLLA-GRTDNAIKNHWNST 109 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MASISRKDMD RVKGPWSPEE DELLQQLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS 60 PQVEHRAFTP EEDDTIIRAH ARFGNKWATI ARLLAGRTDN AIKNHWNSTL KRKCSSMSAD 120 EGNDLADRLQ HQPLKRSVSA GAAVTLHLNP GSPSGSDVSE SSLPVMSPSH VFKPIARTGG 180 VLPPPVETPP PPPLNDPPTS LSLSLPGVDS SSDVSPRLTE STQPISPIQL FSSAMHTPPP 240 PPPPPLPLPV PFQQPLEKFD LGGGAPPPMA CPIPPKEAVP AQQDRVFLPF SQELLAVMQD 300 MIKTEVRNYM MGVEQQQQPP SPPQQQRYHQ HHQQQQQQFQ FQQQQQLQNG IGRGMCMQPA 360 TSNHGLRYAA AAAAAATVNR VGVNRLE

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MASISRKDMD RVKGPWSPEE DELLQQLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PQVEHRAFTP EEDDTIIRAH ARFGNKWATI ARLLAGRTDN AIKNHWNSTL KRKCSSMSAD  120
EGNDLADRLQ HQPLKRSVSA GAAVTLHLNP GSPSGSDVSE SSLPVMSPSH VFKPIARTGG  180
VLPPPVETPP PPPLNDPPTS LSLSLPGVDS SSDVSPRLTE STQPISPIQL FSSAMHTPPP  240
PPPPPLPLPV PFQQPLEKFD LGGGAPPPMA CPIPPKEAVP AQQDRVFLPF SQELLAVMQD  300
MIKTEVRNYM MGVEQQQQPP SPPQQQRYHQ HHQQQQQQFQ FQQQQQLQNG IGRGMCMQPA  360
TSNHGLRYAA AAAAAATVNR VGVNRLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	5e-78	MYB family protein