PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158185.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 339aa MW: 38401 Da PI: 9.4757

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158185.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.4	1.3e-19	91	188	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY++YA+ vGF++r s+ +k r+g ++k+ +vCs+eg++++ + + ++ +r+++r+gCkakl +k ++g ++v+ +el Hn XP_019158185.1 91 FYRHYASVVGFDIRHSSVRKD-RDGVVVKNLLVCSREGFKQSADVLgvgnadsdeaRLAQKGRRVSNRVGCKAKLLLKSVDNGFFVVHFIELRHN 184 9*************99997.9999***********99888999999887666667799***************************** PP FAR1 87 Hela 90 H l+ XP_019158185.1 185 HCLC 188 *998 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MAIVNVHQKR IAVGRGVVGK VILRSQNLSN RDELRHLREH DVVCQIQSGS LKACVMDVSP 60 DGTKYWNPSC DEAIRHFEGQ VFPSLGHGIA FYRHYASVVG FDIRHSSVRK DRDGVVVKNL 120 LVCSREGFKQ SADVLGVGNA DSDEARLAQK GRRVSNRVGC KAKLLLKSVD NGFFVVHFIE 180 LRHNHCLCSD VAKPFLRGNR MMSFQQVFVI NCARANIGPN RSFRLSREFV GLYSNISATC 240 VDFKNFKLDL MAYIGNSDAN VVVNKYVKKV GACPDYFFQY DLNSEDQLRR LFLVDPVAKQ 300 NFTAFGDIVS FDATYETNRE LHAHIPREHV GKYYKLFKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-20	FAR1 family protein