PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019158339.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 156aa    MW: 17269.3 Da    PI: 4.9907
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019158339.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.31.4e-1472136268
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 
                      Yn YA++vGFsvrk +++++  +++i +++f C k g++e+ ++    +  ++   rtgC a ++ 
  XP_019158339.1  72 LYNGYAYRVGFSVRKGQQRYKASTKSIQMKRFFCAKAGYKEKPNSG--VKVYSKIDIRTGCGALVQF 136
                     7***************************************999887..899999********99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    
MTYLRRYDEL QLGVANLEGL SQWPIRNEDF VGDSISTDQA DAKIDIDGSS SSPVDEDLVG  60
VVVSNSDEAF ELYNGYAYRV GFSVRKGQQR YKASTKSIQM KRFFCAKAGY KEKPNSGVKV  120
YSKIDIRTGC GALVQFDVLG GGMDVDSYKT CERAQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.18e-10FAR1 family protein