PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158430.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 756aa MW: 87618.8 Da PI: 8.5772

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158430.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.3	1.7e-20	61	153	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA e+GF+vr +++++ r ge++ + + Cs+eg+++++k+ +e+++r+r+++r+gC a+++++k ++g ++v+ ++l H H l+ XP_019158430.1 61 DFYETYAMEAGFDVRHGTKRRN-RFGEVYIKYMLCSREGYKAKRKEPnnttKERNKRRRVSNRIGCMARMVITKCDTGGYNVHAVQLRHKHCLC 153 6***************9999.777799999*****999988888788888999******************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence
MDANFGTMPP PPPGEEQSEP NVKQCHMEIG DDGDKYWTPA TQKQTTPYEG QRFETIEAGI 60 DFYETYAMEA GFDVRHGTKR RNRFGEVYIK YMLCSREGYK AKRKEPNNTT KERNKRRRVS 120 NRIGCMARMV ITKCDTGGYN VHAVQLRHKH CLCSEDSRPF LKINRQLDIG HKTFLANCAK 180 ANIGPTKAFR LFKEMVGSFT DIGATCIDFC NFRRDLLAYI AEADAQMVIE DLFKRKEANP 240 DFYFDFDIDE EAQLSRIFWA DAESRRNFAC FGDVMSFDAT YSTNRYKLVF VPFTGVDNHK 300 RCITFGAGLI AKEDVESYEW LLKRFKTAME YTPRCTITDQ DPALKIAVPQ TMPTTRHRFC 360 MWHIMTKVGE KVGLTLWHND NFKKELNSIV WDDTLPVDEF ERKWKTLMKD FNLEEHRWFA 420 QLYEARASWI PAYFTDIPMG GLLRTTSRSE SENSYFGKFT NHHCSLVEFM AQYNSAIGEQ 480 RHKQKKLIAE NEGSYPETKS PLSIEKHAAN VYTINIFYEF QEEIWTASFK CHITDKNHTG 540 DIWKYTVEET GKKTFEVTHT PKAEKIECPC KKFNRVGILC RHALVVMKAT GYETIPQKYI 600 VPRWTRDART QPLYDVPWAT RTNIPTTKES EKVANQLWSE FYTCMGLANG WPNKMDQMLA 660 TLQQLKEDLQ RERPQTQESD NNESVLERLV GSTKPGDIQI KPPKVAKNKG SGKRIKSCKE 720 KATTKKQKKK ERTCNICDLP GHNSRTCPDR LASNEI

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence

MDANFGTMPP PPPGEEQSEP NVKQCHMEIG DDGDKYWTPA TQKQTTPYEG QRFETIEAGI  60
DFYETYAMEA GFDVRHGTKR RNRFGEVYIK YMLCSREGYK AKRKEPNNTT KERNKRRRVS  120
NRIGCMARMV ITKCDTGGYN VHAVQLRHKH CLCSEDSRPF LKINRQLDIG HKTFLANCAK  180
ANIGPTKAFR LFKEMVGSFT DIGATCIDFC NFRRDLLAYI AEADAQMVIE DLFKRKEANP  240
DFYFDFDIDE EAQLSRIFWA DAESRRNFAC FGDVMSFDAT YSTNRYKLVF VPFTGVDNHK  300
RCITFGAGLI AKEDVESYEW LLKRFKTAME YTPRCTITDQ DPALKIAVPQ TMPTTRHRFC  360
MWHIMTKVGE KVGLTLWHND NFKKELNSIV WDDTLPVDEF ERKWKTLMKD FNLEEHRWFA  420
QLYEARASWI PAYFTDIPMG GLLRTTSRSE SENSYFGKFT NHHCSLVEFM AQYNSAIGEQ  480
RHKQKKLIAE NEGSYPETKS PLSIEKHAAN VYTINIFYEF QEEIWTASFK CHITDKNHTG  540
DIWKYTVEET GKKTFEVTHT PKAEKIECPC KKFNRVGILC RHALVVMKAT GYETIPQKYI  600
VPRWTRDART QPLYDVPWAT RTNIPTTKES EKVANQLWSE FYTCMGLANG WPNKMDQMLA  660
TLQQLKEDLQ RERPQTQESD NNESVLERLV GSTKPGDIQI KPPKVAKNKG SGKRIKSCKE  720
KATTKKQKKK ERTCNICDLP GHNSRTCPDR LASNEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	118	KRKEPNNTTKERNKRRR
2	115	119	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-96	FAR1 family protein