PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158514.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 609aa MW: 69095 Da PI: 8.6981

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158514.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.7	8.6e-09	8	50	48	90
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 t+ +rr+r+++r+gCkak+++k++++g ++++ +e+ H+H+++ XP_019158514.1 8 TTLARRRRVTNRVGCKAKVVIKRKSNGLYVMHYFEERHTHSMC 50 466899***********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MVSRVAKTTL ARRRRVTNRV GCKAKVVIKR KSNGLYVMHY FEERHTHSMC SIIARQFLKV 60 NRSLDAGHQM FIASCVRANI GSVRSYRLFK EIVGEYSSIG ATGVDFKNFK HDLMVYILNG 120 DAQLFIDTLF KRRELCEAFD FEYDVDEGDQ LSRVFWADAV SRKNFALFGD VVSFDATYRT 180 NRYKLVFVPF TRIDNHKRSI TFGAGLLTRE DVDSYVWLLE KFKKTMCHDP ICVVTDQDPA 240 LKVVVARVFG TSKHRFCMWH IMCKVGEKVG PILSKDEVFR RKLNGIVWNK SLDSKSFEEA 300 WSFIMEEYGL GDNGWFRYLF ESRTYWASPY FHDEFMSGLV RTTSRSESQN SFFGTFSNGH 360 SSLVEFLVHF GSAVGVQRHA QAKLNADCES CFPVLKTPLA LEKHAMDVYT ISVFYDVQVE 420 ICAACYSCQV VSLCDCDGHV SYGIKDGAQR AWYVVSRWTK GACLKPIFHI DDTIVDQSSK 480 VENVRIFTNL LWSDIYACVG LADGNIERLA QLRRVISEQR KLFLQEGSED GSGVVAGGSK 540 QSVINSFCGD VSQGSTVEVR DPIQAKNKGS GKQLKSTREK AASKCVKQSR KCHTCDEYGH 600 NSRTCPLNG

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MVSRVAKTTL ARRRRVTNRV GCKAKVVIKR KSNGLYVMHY FEERHTHSMC SIIARQFLKV  60
NRSLDAGHQM FIASCVRANI GSVRSYRLFK EIVGEYSSIG ATGVDFKNFK HDLMVYILNG  120
DAQLFIDTLF KRRELCEAFD FEYDVDEGDQ LSRVFWADAV SRKNFALFGD VVSFDATYRT  180
NRYKLVFVPF TRIDNHKRSI TFGAGLLTRE DVDSYVWLLE KFKKTMCHDP ICVVTDQDPA  240
LKVVVARVFG TSKHRFCMWH IMCKVGEKVG PILSKDEVFR RKLNGIVWNK SLDSKSFEEA  300
WSFIMEEYGL GDNGWFRYLF ESRTYWASPY FHDEFMSGLV RTTSRSESQN SFFGTFSNGH  360
SSLVEFLVHF GSAVGVQRHA QAKLNADCES CFPVLKTPLA LEKHAMDVYT ISVFYDVQVE  420
ICAACYSCQV VSLCDCDGHV SYGIKDGAQR AWYVVSRWTK GACLKPIFHI DDTIVDQSSK  480
VENVRIFTNL LWSDIYACVG LADGNIERLA QLRRVISEQR KLFLQEGSED GSGVVAGGSK  540
QSVINSFCGD VSQGSTVEVR DPIQAKNKGS GKQLKSTREK AASKCVKQSR KCHTCDEYGH  600
NSRTCPLNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-67	FAR1 family protein