PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158774.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 538aa MW: 58424.5 Da PI: 6.7284

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158774.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.3e-30	290	348	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ XP_019158774.1 290 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTILITTYEGNHNHP 348 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MESMVNNGSP PPTIQFPVSR LINTADHRHH HCHHEHDQED PVDNKRKVLD EMDFFADKTK 60 DEDAGIRKDL HAPTDLDFSI NTCLRLLTSN SSSDDQSSSV VEDRLPPDCE KNGNKTELVA 120 VKAELERMSA ENRVLRDMLS QVSDNYSNLQ KQVINLMQHQ KNNHHHHGKV DEDNNSNNGE 180 IKFPRQFMDL GLATGRSNDG TTTTTDEANL SSSPEGRSSG GNGRESGSSR SPASREESPE 240 KGPSSSGWGP NKVPRLGHGP ESSSVDQATE ATMRKARVSV RARSDAPMIT DGCQWRKYGQ 300 KMAKGNPCPR AYYRCTMATG CPVRKQVQRC AEDRTILITT YEGNHNHPLP PAAMAMASTT 360 SSAAKMLLSG SIPSADGLMN PNILGRTLFP CSSSMATISA SAPFPTVTLD LTETPNPLQF 420 PPRQPNQPPQ FQLPTATSIL PQIFNQALHN QSKFSGLQLS QDLENQSERT TMHQSSQQHN 480 PQLVDTLNSL AGDPNFTAAI AAAITSIIGN SSNPATNSAS NNANSGSNKS TNSSVPAN

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MESMVNNGSP PPTIQFPVSR LINTADHRHH HCHHEHDQED PVDNKRKVLD EMDFFADKTK  60
DEDAGIRKDL HAPTDLDFSI NTCLRLLTSN SSSDDQSSSV VEDRLPPDCE KNGNKTELVA  120
VKAELERMSA ENRVLRDMLS QVSDNYSNLQ KQVINLMQHQ KNNHHHHGKV DEDNNSNNGE  180
IKFPRQFMDL GLATGRSNDG TTTTTDEANL SSSPEGRSSG GNGRESGSSR SPASREESPE  240
KGPSSSGWGP NKVPRLGHGP ESSSVDQATE ATMRKARVSV RARSDAPMIT DGCQWRKYGQ  300
KMAKGNPCPR AYYRCTMATG CPVRKQVQRC AEDRTILITT YEGNHNHPLP PAAMAMASTT  360
SSAAKMLLSG SIPSADGLMN PNILGRTLFP CSSSMATISA SAPFPTVTLD LTETPNPLQF  420
PPRQPNQPPQ FQLPTATSIL PQIFNQALHN QSKFSGLQLS QDLENQSERT TMHQSSQQHN  480
PQLVDTLNSL AGDPNFTAAI AAAITSIIGN SSNPATNSAS NNANSGSNKS TNSSVPAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	6e-98	WRKY family protein