PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019158784.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 266aa    MW: 29887.6 Da    PI: 4.841
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019158784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.4e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l+  ++ +G ++W+  ++  g+ R++k+c++rw +yl
   XP_019158784.1 14 KGLWSKEEDNKLKTFIESHGHKNWRQLPKIAGLSRCGKSCRLRWMNYL 61
                     678*******************************************97 PP
2Myb_DNA-binding50.64.3e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g ++ +Ede+++ ++++lG++ W++Ia+ ++ gR+++++k++w+++l
   XP_019158784.1  67 KGGFSVQEDEIIIGLHNKLGNK-WSAIAELLP-GRSDNEIKNHWHTHL 112
                      57799*****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MVKTPSVDKN GIKKGLWSKE EDNKLKTFIE SHGHKNWRQL PKIAGLSRCG KSCRLRWMNY  60
LRPGLKKGGF SVQEDEIIIG LHNKLGNKWS AIAELLPGRS DNEIKNHWHT HLKKRAKETQ  120
KPEESMELLP PTAETSEISD FEFNPQEDIF NILNPDEVSL PQNSQTVDNI PLSQEVSAAS  180
GGGISSSSSS SSISDWIIDD ISTISLESFM DPLESFWTEP FVADTLLYPK NVGYPVTLFE  240
GENFPVQTSL LGGDIVPTYF EDATWY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.15e-54MYB family protein