PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158785.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 266aa MW: 30138.6 Da PI: 5.2447

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.9	6.4e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l +v ++G +W+ ++ g+ R++k+c++rw +yl XP_019158785.1 14 KGAWSEEEDDKLRAYVLRYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 61 79****************99**********************97 PP
2	Myb_DNA-binding	53.4	5.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ +Ede +++++k+lG++ W++Ia +++ gR+++++k++w+ + XP_019158785.1 67 RGSFSNDEDEMIIKLHKELGNK-WSAIAGKLP-GRSDNEIKNHWHAH 111 899*****************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MVRGPSVDKN GLKKGAWSEE EDDKLRAYVL RYGHWNWRQL PKFAGLSRCG KSCRLRWMNY 60 LKPGIKRGSF SNDEDEMIIK LHKELGNKWS AIAGKLPGRS DNEIKNHWHA HLKKHLQTKQ 120 DPKIIRSELK INETTAEYGS SETTQKVKIG EDESSFYDAI SRYSQGTSSS EESSCLSSIS 180 ISKSLDLSCN TTGWTVPEEG VMMTSSQSFG ETFDCFWDDL LFADASFSPS ESEGGFMSPT 240 SQVEEEFTLP YSLFGEDDVN FLNNFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	3e-55	MYB family protein