PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158786.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 379aa MW: 41558.3 Da PI: 6.7293

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158786.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.5e-18	203	257	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F++n++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_019158786.1 203 RKKLRLSKQQSAFLEESFKENHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 257 788899***********************************************98 PP
2	HD-ZIP_I/II	124.5	5e-40	203	292	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E d+++Lkr++++l+een+rL+ke +eLr +l XP_019158786.1 203 RKKLRLSKQQSAFLEESFKENHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEIDCDYLKRCCETLTEENKRLHKELQELR-AL 292 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MELGLSLGDS SSKPEDHHNH RPRTAATTKK DGLNFCMALG ILSDIEQPGN TRKPKQNDSD 60 DRISNDDDDQ IASEEEEEEE GHNCRALVPR ASLQLDLLPL APVPVSRHHP FPWSSGNGSS 120 ENGSSGNMEL QTTARGFDVS RLPKTAAAAT EEVSSSFCME SASIFKRGGS GMLSICEAAG 180 EAERASSRAS DEDENNGGVN NARKKLRLSK QQSAFLEESF KENHTLNPKQ KLALAKQLNL 240 RPRQVEVWFQ NRRARTKLKQ TEIDCDYLKR CCETLTEENK RLHKELQELR ALKTCNPFYS 300 NLPATTLTMC PSCEKVATTT TTTTTATVTT AIATISDSHP TATAMVATVT NPESIPKAIP 360 FLTRKGSFPF TTSHNHAPS

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MELGLSLGDS SSKPEDHHNH RPRTAATTKK DGLNFCMALG ILSDIEQPGN TRKPKQNDSD  60
DRISNDDDDQ IASEEEEEEE GHNCRALVPR ASLQLDLLPL APVPVSRHHP FPWSSGNGSS  120
ENGSSGNMEL QTTARGFDVS RLPKTAAAAT EEVSSSFCME SASIFKRGGS GMLSICEAAG  180
EAERASSRAS DEDENNGGVN NARKKLRLSK QQSAFLEESF KENHTLNPKQ KLALAKQLNL  240
RPRQVEVWFQ NRRARTKLKQ TEIDCDYLKR CCETLTEENK RLHKELQELR ALKTCNPFYS  300
NLPATTLTMC PSCEKVATTT TTTTTATVTT AIATISDSHP TATAMVATVT NPESIPKAIP  360
FLTRKGSFPF TTSHNHAPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	252	260	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	9e-52	HD-ZIP family protein