PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158787.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 377aa MW: 41387.2 Da PI: 6.7293

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.5e-18	201	255	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F++n++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_019158787.1 201 RKKLRLSKQQSAFLEESFKENHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 255 788899***********************************************98 PP
2	HD-ZIP_I/II	124.5	4.9e-40	201	290	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E d+++Lkr++++l+een+rL+ke +eLr +l XP_019158787.1 201 RKKLRLSKQQSAFLEESFKENHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEIDCDYLKRCCETLTEENKRLHKELQELR-AL 290 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MELGLSLGDS SSKPEDHHNH RPRTAATTKK DGLNFCMALG ILSDIEQPGN TRKPKQNDSD 60 DRISNDDDDQ IASEEEEEEE GHNCRALVPR ASLQLDLLPL APVPVSRHHP FPWSSGSSEN 120 GSSGNMELQT TARGFDVSRL PKTAAAATEE VSSSFCMESA SIFKRGGSGM LSICEAAGEA 180 ERASSRASDE DENNGGVNNA RKKLRLSKQQ SAFLEESFKE NHTLNPKQKL ALAKQLNLRP 240 RQVEVWFQNR RARTKLKQTE IDCDYLKRCC ETLTEENKRL HKELQELRAL KTCNPFYSNL 300 PATTLTMCPS CEKVATTTTT TTTATVTTAI ATISDSHPTA TAMVATVTNP ESIPKAIPFL 360 TRKGSFPFTT SHNHAPS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MELGLSLGDS SSKPEDHHNH RPRTAATTKK DGLNFCMALG ILSDIEQPGN TRKPKQNDSD  60
DRISNDDDDQ IASEEEEEEE GHNCRALVPR ASLQLDLLPL APVPVSRHHP FPWSSGSSEN  120
GSSGNMELQT TARGFDVSRL PKTAAAATEE VSSSFCMESA SIFKRGGSGM LSICEAAGEA  180
ERASSRASDE DENNGGVNNA RKKLRLSKQQ SAFLEESFKE NHTLNPKQKL ALAKQLNLRP  240
RQVEVWFQNR RARTKLKQTE IDCDYLKRCC ETLTEENKRL HKELQELRAL KTCNPFYSNL  300
PATTLTMCPS CEKVATTTTT TTTATVTTAI ATISDSHPTA TAMVATVTNP ESIPKAIPFL  360
TRKGSFPFTT SHNHAPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	250	258	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	9e-52	HD-ZIP family protein