PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158788.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 377aa MW: 41302 Da PI: 6.5813

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158788.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.7	5.3e-15	203	255	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F++n++++ + LAk+l+L rqV vWFqNrRa+ k XP_019158788.1 203 RKKLRLSKQQSAFLEESFKENHTLNPK--LALAKQLNLRPRQVEVWFQNRRARTK 255 788899****************986..69********************98 PP
2	HD-ZIP_I/II	114.7	5.4e-37	203	290	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p K +la++L+l+prqv+vWFqnrRARtk+kq+E d+++Lkr++++l+een+rL+ke +eLr +l XP_019158788.1 203 RKKLRLSKQQSAFLEESFKENHTLNP--KLALAKQLNLRPRQVEVWFQNRRARTKLKQTEIDCDYLKRCCETLTEENKRLHKELQELR-AL 290 69*********************9..79*******************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MELGLSLGDS SSKPEDHHNH RPRTAATTKK DGLNFCMALG ILSDIEQPGN TRKPKQNDSD 60 DRISNDDDDQ IASEEEEEEE GHNCRALVPR ASLQLDLLPL APVPVSRHHP FPWSSGNGSS 120 ENGSSGNMEL QTTARGFDVS RLPKTAAAAT EEVSSSFCME SASIFKRGGS GMLSICEAAG 180 EAERASSRAS DEDENNGGVN NARKKLRLSK QQSAFLEESF KENHTLNPKL ALAKQLNLRP 240 RQVEVWFQNR RARTKLKQTE IDCDYLKRCC ETLTEENKRL HKELQELRAL KTCNPFYSNL 300 PATTLTMCPS CEKVATTTTT TTTATVTTAI ATISDSHPTA TAMVATVTNP ESIPKAIPFL 360 TRKGSFPFTT SHNHAPS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MELGLSLGDS SSKPEDHHNH RPRTAATTKK DGLNFCMALG ILSDIEQPGN TRKPKQNDSD  60
DRISNDDDDQ IASEEEEEEE GHNCRALVPR ASLQLDLLPL APVPVSRHHP FPWSSGNGSS  120
ENGSSGNMEL QTTARGFDVS RLPKTAAAAT EEVSSSFCME SASIFKRGGS GMLSICEAAG  180
EAERASSRAS DEDENNGGVN NARKKLRLSK QQSAFLEESF KENHTLNPKL ALAKQLNLRP  240
RQVEVWFQNR RARTKLKQTE IDCDYLKRCC ETLTEENKRL HKELQELRAL KTCNPFYSNL  300
PATTLTMCPS CEKVATTTTT TTTATVTTAI ATISDSHPTA TAMVATVTNP ESIPKAIPFL  360
TRKGSFPFTT SHNHAPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	250	258	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-61	HD-ZIP family protein