PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158841.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 224aa MW: 25567 Da PI: 8.5813

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158841.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.7	4.1e-18	78	132	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee+F+ + +++ ++ eLA+kl+L rqV vWFqNrRa+ k XP_019158841.1 78 RKKLRLNKEQSALLEECFKHQTTLTMGRKHELATKLNLRPRQVEVWFQNRRARTK 132 678899***********************************************98 PP
2	HD-ZIP_I/II	111.6	5.2e-36	78	168	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEe+F+++++L+ rK+ela++L+l+prqv+vWFqnrRARtk+kq+E+d++ +k+ +++l+ en rL++e +eLr++ XP_019158841.1 78 RKKLRLNKEQSALLEECFKHQTTLTMGRKHELATKLNLRPRQVEVWFQNRRARTKLKQTEVDCNLMKKYCESLNYENYRLRRELHELRSSF 168 69*************************************************************************************9865 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MAEDDQKLDL RLGLGHCTLP KEPKKTSGFG VSLDLSFPLS HSNDQSGVDI IESSKSYEVE 60 GMESQISYST KSHTGLMRKK LRLNKEQSAL LEECFKHQTT LTMGRKHELA TKLNLRPRQV 120 EVWFQNRRAR TKLKQTEVDC NLMKKYCESL NYENYRLRRE LHELRSSFKF DNRPPPPFSD 180 QPPKAKTTTV TCPSCEKTTG LLSGAGGDQK DETELVDTVL ELKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	135	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-32	HD-ZIP family protein