PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158973.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 352aa MW: 39409.4 Da PI: 5.5978

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158973.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	6.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++ ++++G+g+W+t ++ g+ R++k+c++rw +yl XP_019158973.1 14 KGPWTPEEDLKLIHHIQLHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.6	5.3e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_019158973.1 67 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MGRSPCCDKN GLKKGPWTPE EDLKLIHHIQ LHGPGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRSG 120 IDPVTHSPRL DLLDLPSLLN LTQLNLSGLL GLQALASPEV LRLLCTLMAA QNENNSPQIL 180 LQKLQESQFL NNQVENENEN ENPMLLLQKL QENQSLNAPI QNHQTADFQF LDTVPSNNVC 240 ASSSLPMQPT NLSGGQVIQE SLIPSNGGNL MMNSLQNNYY GVFEPEQSLS DWSNHHNFGL 300 DSVLSTPLSS PGSTTFVNSG STCTEDEKES DCISNIMKFE IPSASLDFED LL

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MGRSPCCDKN GLKKGPWTPE EDLKLIHHIQ LHGPGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRSG  120
IDPVTHSPRL DLLDLPSLLN LTQLNLSGLL GLQALASPEV LRLLCTLMAA QNENNSPQIL  180
LQKLQESQFL NNQVENENEN ENPMLLLQKL QENQSLNAPI QNHQTADFQF LDTVPSNNVC  240
ASSSLPMQPT NLSGGQVIQE SLIPSNGGNL MMNSLQNNYY GVFEPEQSLS DWSNHHNFGL  300
DSVLSTPLSS PGSTTFVNSG STCTEDEKES DCISNIMKFE IPSASLDFED LL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28110.1	1e-88	MYB family protein