PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019158977.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 260aa MW: 29310.6 Da PI: 8.1137

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019158977.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	7.7e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l+ +++++G +W+ +++ g+ R++k+c++rw +yl XP_019158977.1 14 KGTWTVEEDKKLAAYITKYGCWNWRQLPKYAGLSRCGKSCRLRWMNYL 61 799***************99**********************97 PP
2	Myb_DNA-binding	59.8	5.8e-19	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eEd+l++++++qlG++ W++Ia +++ gRt++++k++w++ XP_019158977.1 67 RGNYSQEEDQLILKLHRQLGNK-WSAIATHLP-GRTDNEIKNHWHT 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MVRTPCCDVS GMKKGTWTVE EDKKLAAYIT KYGCWNWRQL PKYAGLSRCG KSCRLRWMNY 60 LRPNIKRGNY SQEEDQLILK LHRQLGNKWS AIATHLPGRT DNEIKNHWHT SLKKLTEQGY 120 ASSSSPTQQP RKKPSAGRTK RSRKQQEIPS SVSAHEILES SQWSSSSSSS PSSSSSPSIG 180 TSSPNGENTP EPSPDQIQTP QILGSSEDES FWNEPFLLDN AFASDDFLDY RPASPFSQYG 240 EFSSSCNLVD ELVNELMDYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28110.1	4e-55	MYB family protein