PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019158984.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 229aa    MW: 23525.7 Da    PI: 8.3009
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019158984.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.7e-39281281100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf ++q ++ fa vhk+FGasnv+kll+++p+++r da+ ++++eA+ar+rdPvyG+v++i+++qqq+ +l+ael
  XP_019158984.1  28 PCGACKFLRRKCVAGCIFAPYFDSDQgASVFASVHKVFGASNVSKLLHHIPPHKRLDAVITVCFEAQARLRDPVYGCVAHIFAIQQQVVNLQAEL 122
                     7***********************99889****************************************************************** PP

          DUF260  95 allkee 100
                     ++l+++
  XP_019158984.1 123 SYLQAH 128
                     *99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MSLNSSSTSS GGGGGGGGGG GGGGGGGPCG ACKFLRRKCV AGCIFAPYFD SDQGASVFAS  60
VHKVFGASNV SKLLHHIPPH KRLDAVITVC FEAQARLRDP VYGCVAHIFA IQQQVVNLQA  120
ELSYLQAHLA SLQVPTPPPP PPMSAMNIAD LSTASPAYDT LSSLFDPTSS MVQPAAWPPP  180
PPMQQTRHLG GAANRDPAAD GMSSSSPPAG SGVLQELTRH LMRRPPQGC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.12e-67LBD family protein