PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159012.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 163aa MW: 17891.8 Da PI: 7.072

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k+F++ L H +H XP_019159012.1 76 YRCESCRKVFRSYQALGGHRASH 98 9***********99999998887 PP
2	zf-C2H2	12.2	0.00056	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H XP_019159012.1 125 HECPFCYRVFSSGQALGGHKRSH 147 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence
MRSHVWNPYM QRTAAAAAAG DDSETEAVSS VSDYSPEEDG AYCLMMLSRD KWADEESSQP 60 AGSGEVKTTA NGKKKYRCES CRKVFRSYQA LGGHRASHKK IIKRCDDDEN VLVGENNGDV 120 EEKLHECPFC YRVFSSGQAL GGHKRSHFTA ASASTCLLSP STK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	6e-36	C2H2 family protein