PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019159042.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 144aa    MW: 16120.9 Da    PI: 9.4712
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019159042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.43.7e-4243119177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cqve+C+adls+ak+yhrrhkvCe+h+ka+vv+++gl+qrfCqqCsrfhe+ efD++krsCrrrLa+hnerrrk++
  XP_019159042.1  43 CCQVEKCSADLSDAKQYHRRHKVCEHHAKAQVVIIAGLRQRFCQQCSRFHEVGEFDDAKRSCRRRLAGHNERRRKNS 119
                     6**************************************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    
MGRSGSMEED LLLRDEDNKK RRGGRKGGGE NSGGGYGGGS MRCCQVEKCS ADLSDAKQYH  60
RRHKVCEHHA KAQVVIIAGL RQRFCQQCSR FHEVGEFDDA KRSCRRRLAG HNERRRKNSA  120
ADSHAAEEGT SRAQIIQVDE HGRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12329GGRKGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.18e-42SBP family protein