PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159090.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 286aa MW: 32646 Da PI: 8.0649

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159090.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.7	4e-23	46	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA+ +GF+vr+s+ kk+ r g i ++++vCs+eg++e+++++ +k+r +r++tr+gC a+++ k++k g+++vt++e+ H+H l XP_019159090.1 46 EFYMKYASIAGFDVRQSSDKKN-RYGAILRKKMVCSREGFKETKNTEpavsdaPTKARCRRPSTRVGCMARIVFKRDKAGRYVVTTFEEAHTHCL 139 6**************99988.7888************99999999999999**********************************99 PP FAR1 90 a 90 + XP_019159090.1 140 C 140 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence
MEDDAGQREC VMDVSPGGNE TWLTECDPNI KPTQGQMFKN LDDGIEFYMK YASIAGFDVR 60 QSSDKKNRYG AILRKKMVCS REGFKETKNT EPAVSDAPTK ARCRRPSTRV GCMARIVFKR 120 DKAGRYVVTT FEEAHTHCLC EESYKPFLKV NRKLDVGHQQ FITNCSKVNV GASKSFDIYA 180 EMVGGVENVG CMQQDFKNYR REVLAYMQGR DAQMVISKYL DIKSDYSDMY FEYEANEKDQ 240 LARVFWADGV ARQKFCAFGD VVSFDATYKT NRYNLVFVPF TGATLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-32	FAR1 family protein