PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159117.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 460aa MW: 50395.1 Da PI: 5.9476

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.4	3.2e-17	137	186	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_019159117.1 137 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 186 78*****************......55**********************998 PP
2	AP2	44	5.6e-14	229	279	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ kl g XP_019159117.1 229 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKLSG 279 89******.7**5553..2.26******99**********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MFDLNLSAVE AIGDRGVAAS EKVLELSGTS NSSVVNAETS STAGDDEYSC SDGYAFEILR 60 REEDGKEYGE SENRGGFETM ELFPLSGGEA ALFNQQQQQW LDLSANYGIV ADPRIMILPP 120 QRPQVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA 180 AIKFRGLDAD INFNVTDYEE DLQQMKNLTK EEFVHILRRQ STGFSRGSSK YRGVTLHKCG 240 RWEARMGQFL GKKYIYLGLF DSEIEAARAY DKAAIKLSGR EAVTNFELSA YEQELTSEVD 300 TGGGSQDLDL HLGIAPTSFV DGMGTLQLQS GLASPKHWGV GTSASNTVES ELLPHGFELL 360 SEHPPICNGV NTQFFPIYKG TAIGKGMEID SSPNWAQAYG GTPPATLFST AASSGFANAT 420 FTSSPAAPRL PHFSSGMLPY HHSSPPIPTM NSTAHFCCRS

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MFDLNLSAVE AIGDRGVAAS EKVLELSGTS NSSVVNAETS STAGDDEYSC SDGYAFEILR  60
REEDGKEYGE SENRGGFETM ELFPLSGGEA ALFNQQQQQW LDLSANYGIV ADPRIMILPP  120
QRPQVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA  180
AIKFRGLDAD INFNVTDYEE DLQQMKNLTK EEFVHILRRQ STGFSRGSSK YRGVTLHKCG  240
RWEARMGQFL GKKYIYLGLF DSEIEAARAY DKAAIKLSGR EAVTNFELSA YEQELTSEVD  300
TGGGSQDLDL HLGIAPTSFV DGMGTLQLQS GLASPKHWGV GTSASNTVES ELLPHGFELL  360
SEHPPICNGV NTQFFPIYKG TAIGKGMEID SSPNWAQAYG GTPPATLFST AASSGFANAT  420
FTSSPAAPRL PHFSSGMLPY HHSSPPIPTM NSTAHFCCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-103	AP2 family protein