PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159181.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 234aa MW: 26024.6 Da PI: 7.2969

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159181.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.1	4.8e-06	32	76	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + +E++RR++++ ++ L +l+P++ ++ l + + +++YIk L XP_019159181.1 32 KYVEKNRRNQLKGLYNHLFSLVPSS----QETLPLPDQVDVTINYIKTL 76 568*********************8....56788888888888888877 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MENAGQPPGT ARANLVQKTA VLCGRGPKLE RKYVEKNRRN QLKGLYNHLF SLVPSSQETL 60 PLPDQVDVTI NYIKTLKEKL EKMKHQREEL TKVQMSRKMN SSASSSSHHS LHVEPHPQIQ 120 IHEMGPAMAV VFITGLDNVA TFNNVIRVVR GEEGVEVASA NFQLHGNSTL QIVVGEPVGK 180 WAVSNGAITS VSKKLKEMIS GTASTETESS SRLELWDYDI ENEEILILSD ERNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	7e-17	bHLH family protein