PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159234.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 254aa MW: 28966.7 Da PI: 8.4517

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159234.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.8	5.2e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaevaviifss+gklye+ XP_019159234.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	101.7	1e-33	82	171	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e++++++++e+ kLk+++e+Lqr+qRhllGedL++Ls+keLq+Le+qLe++l + R+kK++++le++eel++ke+ l++ nk+L++k+ XP_019159234.1 82 SIERETQNWSHEVIKLKAKYESLQRTQRHLLGEDLGPLSIKELQNLEKQLENALAQTRQKKTQVMLEHMEELRRKERHLDDVNKQLKTKV 171 457789*********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSS RGKLYEFGSS 60 SYGITKTLER YENCSFNPQE NSIERETQNW SHEVIKLKAK YESLQRTQRH LLGEDLGPLS 120 IKELQNLEKQ LENALAQTRQ KKTQVMLEHM EELRRKERHL DDVNKQLKTK VSLELSSLEA 180 AEGQGLGALL CPWNSSNASA STSSFPVQHS QPNHMDFSLE PVLQIGYPHY MAGEGSSGNR 240 NMAVESDIYH GWNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	4e-95	MIKC_MADS family protein