PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159236.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 220aa MW: 25361.7 Da PI: 5.5633

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159236.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95	3.3e-30	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_019159236.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59 8***********************************************86 PP
2	K-box	82.3	1.1e-27	82	173	8	98
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 s +e+++++lq e + L k+i+ L+ ++R+llGedL+ + ++eLqq+eqqLe+s++ iR++K+e++ eqi++l++ke++l+ en L k+ XP_019159236.1 82 SvEQEQDMQHLQLETECLAKKIDYLEASKRRLLGEDLGACAMEELQQIEQQLERSVNIIRARKMEVYAEQIKRLREKEDSLKAENAVLWDKY 173 3478999*******************************************************************************999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS 60 STREIIERYR RHTADVQAEN PSVEQEQDMQ HLQLETECLA KKIDYLEASK RRLLGEDLGA 120 CAMEELQQIE QQLERSVNII RARKMEVYAE QIKRLREKED SLKAENAVLW DKYNGLQPQQ 180 VSNEGNEKES AEGSEKSDVE TELFIGLPES RAKPVLSNER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	7e-75	MIKC_MADS family protein