PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019159247.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 345aa    MW: 39610.9 Da    PI: 9.654
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019159247.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.82.1e-14481371090
            FAR1  10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     vGF++r+s++kk   +gei ++   Cs+eg+++++  +          +++  r+r+++r+gC+a+++ k+  +g ++v +le+ HnH ++
  XP_019159247.1  48 VGFDIRRSSEKKD-GQGEILMKYVLCSREGFKQPTILSigadgsrgetRTEVIRRRTSNRVGCNARIVFKRVGSGGFVVFSLEERHNHCMC 137
                     8*******98887.8888*****************9999*****99887778889*********************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MEGSTAGESM LVILVVLKVV SWKFPREIRN IGLRSAIRQL SQWKDRIVGF DIRRSSEKKD  60
GQGEILMKYV LCSREGFKQP TILSIGADGS RGETRTEVIR RRTSNRVGCN ARIVFKRVGS  120
GGFVVFSLEE RHNHCMCSEV SKTFLRVKRK LDLGHQIFIV KCAKANIGPI KSFKLYKEMV  180
GDYSKIGATS VEFCNFRRDM MAYIETGDAH LVLAKYRQKK EVCPEMYFEY DVDEYDHLCR  240
VFWADPEAKR NFARFGDAMS FDATYSTNRY SLVFVPFTGV DHHKKCITFA IGLISKEDVK  300
SYAWLLENFK KCMGHVPQLT VTDQDPAMKS AVAQVFESTR HRFCM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-45FAR1 family protein