PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159340.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 651aa MW: 72583 Da PI: 10.3983

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.5	3.6e-09	11	43	3	36
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 W+t+E++ll+ avk++G ++W+++a ++ +Rt XP_019159340.1 11 TWSTWEELLLAFAVKRHGLKDWDSVAMELR-TRT 43 6*****************************.777 PP

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence
MSKLTEAKKI TWSTWEELLL AFAVKRHGLK DWDSVAMELR TRTSLPDLLT AQVCREKYGD 60 LHRRFMNSDE LAVDVDAGAG AIDIPWLDKL RQLRVTELKQ EVHRYDLSIQ SLQLKVKRME 120 EERDHSLRES QNDAVKPDLK EDRKEKRSEN DEKNGDGETP EKASGKSVSV TESDRENRSF 180 NESNSTENRG TEEKAEPLSI EGGETKPDPQ TKPVREEDSC NDSSDRREES NRSQDRKSEN 240 ELAAETRDSV GASKESSDVQ STASLTKKRR KRADLSGGDG GNVATAAAAA ASPATATKRE 300 SAVKSEPFVG LLDIIRSRKH ASMFERRLDS QKTERYKSII RRHVDFGTVQ ARIDDGFYSG 360 CPMSFYLDLL LLFNNAIVFF PKSSPEWRAA HQHRDIVTKE LRNYRSSTAA EQPSSAAKVE 420 PEQPKLERPD SLLVKQKSTA PIVVCRKRSS FSAKAAGSGN KQENEKPPLN PKTAANKSSP 480 STPPEDDSSK KMKPNEKPVT GVRSMRRTTK GRPANASQST NVKKSGGAPS NKPESSKMEE 540 ETSSIDKKRG AADFLKRIKK NSATKDTLVD NSSSSKRVQQ KRKPGTEERR VPPPVKEAKV 600 VENSPSKRSV GRPSKRSREA AATPPAEKRG KETNSNSKEG SSKRPQKRSR R

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence

MSKLTEAKKI TWSTWEELLL AFAVKRHGLK DWDSVAMELR TRTSLPDLLT AQVCREKYGD  60
LHRRFMNSDE LAVDVDAGAG AIDIPWLDKL RQLRVTELKQ EVHRYDLSIQ SLQLKVKRME  120
EERDHSLRES QNDAVKPDLK EDRKEKRSEN DEKNGDGETP EKASGKSVSV TESDRENRSF  180
NESNSTENRG TEEKAEPLSI EGGETKPDPQ TKPVREEDSC NDSSDRREES NRSQDRKSEN  240
ELAAETRDSV GASKESSDVQ STASLTKKRR KRADLSGGDG GNVATAAAAA ASPATATKRE  300
SAVKSEPFVG LLDIIRSRKH ASMFERRLDS QKTERYKSII RRHVDFGTVQ ARIDDGFYSG  360
CPMSFYLDLL LLFNNAIVFF PKSSPEWRAA HQHRDIVTKE LRNYRSSTAA EQPSSAAKVE  420
PEQPKLERPD SLLVKQKSTA PIVVCRKRSS FSAKAAGSGN KQENEKPPLN PKTAANKSSP  480
STPPEDDSSK KMKPNEKPVT GVRSMRRTTK GRPANASQST NVKKSGGAPS NKPESSKMEE  540
ETSSIDKKRG AADFLKRIKK NSATKDTLVD NSSSSKRVQQ KRKPGTEERR VPPPVKEAKV  600
VENSPSKRSV GRPSKRSREA AATPPAEKRG KETNSNSKEG SSKRPQKRSR R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	271	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	1e-100	MYB_related family protein