PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159473.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 573aa MW: 62608.3 Da PI: 7.0592

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.8	6e-30	301	358	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK v+g+ef rsYY+Ct+++C++k++vers+ d++++ei Y g+H+h+k XP_019159473.1 301 EDGYNWRKYGQKLVRGNEFIRSYYKCTHTNCTAKRQVERSQ-DGHITEINYIGNHEHPK 358 7**************************************.*************85 PP
2	WRKY	106.2	1.6e-33	473	531	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpkvv++tYeg+H+h+ XP_019159473.1 473 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNAGCPVKKHVERASHDPKVVITTYEGQHDHD 531 58********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence
MLIIIPRRVL GPSQICYSLP PSLSSAIDGC SDSLSPALLN RKSSSSRSAP RLGIRSVSGL 60 MGTPMEEGVD EGSLGKLQPK REPNTGSLES ETEHKVSDEL VTAEGVSGKV QKRLSPNVKA 120 EASESSERKD GVPDKCETVP SDMQRRQGVV NGSSASSQSE KEKSSHSGIQ VKDGEEVQQK 180 QGVGSDTDAA SQFSQVSIVP KKESDSDGTG HEQSNDEKIR GSETLALSVI PEKNSDNPQQ 240 LQIQSMEVLA THSNQARVTY VKPHEKGLDK LQPRRNPEIG AHTPQFDQRS APSKAPEKPS 300 EDGYNWRKYG QKLVRGNEFI RSYYKCTHTN CTAKRQVERS QDGHITEINY IGNHEHPKPQ 360 NSPQISAPTI LPIQMRRPDL PIMTPSEGTQ SVTQGEKCET PEPKQITSPV GVASADIGAR 420 DSVLQSHNLR DEDDHCGGPD SKKQKKCLSS SDDNKPHGEP RHVVQTMSEV DIVNDGYRWR 480 KYGQKLVKGN PNPRSYYRCS NAGCPVKKHV ERASHDPKVV ITTYEGQHDH DIPPSRTITQ 540 NSGEGDATSG ESRPESGENK HVGLDMVVHI GAN

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence

MLIIIPRRVL GPSQICYSLP PSLSSAIDGC SDSLSPALLN RKSSSSRSAP RLGIRSVSGL  60
MGTPMEEGVD EGSLGKLQPK REPNTGSLES ETEHKVSDEL VTAEGVSGKV QKRLSPNVKA  120
EASESSERKD GVPDKCETVP SDMQRRQGVV NGSSASSQSE KEKSSHSGIQ VKDGEEVQQK  180
QGVGSDTDAA SQFSQVSIVP KKESDSDGTG HEQSNDEKIR GSETLALSVI PEKNSDNPQQ  240
LQIQSMEVLA THSNQARVTY VKPHEKGLDK LQPRRNPEIG AHTPQFDQRS APSKAPEKPS  300
EDGYNWRKYG QKLVRGNEFI RSYYKCTHTN CTAKRQVERS QDGHITEINY IGNHEHPKPQ  360
NSPQISAPTI LPIQMRRPDL PIMTPSEGTQ SVTQGEKCET PEPKQITSPV GVASADIGAR  420
DSVLQSHNLR DEDDHCGGPD SKKQKKCLSS SDDNKPHGEP RHVVQTMSEV DIVNDGYRWR  480
KYGQKLVKGN PNPRSYYRCS NAGCPVKKHV ERASHDPKVV ITTYEGQHDH DIPPSRTITQ  540
NSGEGDATSG ESRPESGENK HVGLDMVVHI GAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04880.2	2e-71	WRKY family protein