PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159479.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GeBP

Protein Properties

Length: 399aa MW: 44493.3 Da PI: 4.8358

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	109.2	2.9e-34	162	254	3	98
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 f+r+w+e+Dei++L G+id+k+++g++ps+d++af+ef+k+++++++s++q+ eKirr++kKf ++ ++ g+ p+f+k+hd k+fe+skk+Wg XP_019159479.1 162 FNRVWNEDDEIAVLEGMIDYKNQKGADPSADLSAFHEFIKGKLQADISRTQMYEKIRRFRKKFFTNIER---GDTPDFNKPHDYKTFEVSKKVWG 253 89***************************************************************99...********************9 PP DUF573 98 s 98 s XP_019159479.1 254 S 254 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MAPKSQTRLV DQPPSASSSE DEEESDPEEE TQNSEEESEE EDEEAPEQAP KKAPEQPPKR 60 APSPPLLSKK PTVQKPQSSS GSESESDEEG SDSSQHTEPS HSVSDFTIKT NLPSNAPPAS 120 KPPAKRPMET PVRESAKKKL KSGEEDGNAE EKKVPGSASA GFNRVWNEDD EIAVLEGMID 180 YKNQKGADPS ADLSAFHEFI KGKLQADISR TQMYEKIRRF RKKFFTNIER GDTPDFNKPH 240 DYKTFEVSKK VWGSSGVSNG VNENTKSSNV KAKRAAEIKK ISEPKKGAKV SDFDVTKEEE 300 KEKPNVTKDK DTGISLKDEG DFKSKYPRLV QSFNKANMPK LSEEALAIIQ ENLSLIGSSK 360 AEEFEEQWTK ILKEEAELFL KMTDLMGEQI KLIVETIKR

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MAPKSQTRLV DQPPSASSSE DEEESDPEEE TQNSEEESEE EDEEAPEQAP KKAPEQPPKR  60
APSPPLLSKK PTVQKPQSSS GSESESDEEG SDSSQHTEPS HSVSDFTIKT NLPSNAPPAS  120
KPPAKRPMET PVRESAKKKL KSGEEDGNAE EKKVPGSASA GFNRVWNEDD EIAVLEGMID  180
YKNQKGADPS ADLSAFHEFI KGKLQADISR TQMYEKIRRF RKKFFTNIER GDTPDFNKPH  240
DYKTFEVSKK VWGSSGVSNG VNENTKSSNV KAKRAAEIKK ISEPKKGAKV SDFDVTKEEE  300
KEKPNVTKDK DTGISLKDEG DFKSKYPRLV QSFNKANMPK LSEEALAIIQ ENLSLIGSSK  360
AEEFEEQWTK ILKEEAELFL KMTDLMGEQI KLIVETIKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	140	KRPMETPVRESAKKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	2e-19	GeBP family protein