PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019159560.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family YABBY
Protein Properties Length: 219aa    MW: 24330.8 Da    PI: 7.894
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019159560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY234.13.2e-72201833170
           YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkee..lleelkveeenlksnvekeesast 94 
                     +  s eq+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhCt+llsvn++     + + + hl +s+  +  ll+e +++  +l +n+ + +++  
  XP_019159560.1  20 LSPSGEQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLlPTAPNQLHLPHSFFSPqnLLDEIRNTPPSLLMNQPNPNESL- 113
                     567889*****************************************99877245667778888887653466777766666666554444332. PP

           YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                           ++    +e+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  XP_019159560.1 114 ------MPIRGVDELPKPPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 183
                     ......34566789***999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MSSSSTAFAP DHHHHHPHHL SPSGEQLCYV HCNFCDTVLA VSVPCSSLFK TVTVRCGHCT  60
NLLSVNMRGL LLPTAPNQLH LPHSFFSPQN LLDEIRNTPP SLLMNQPNPN ESLMPIRGVD  120
ELPKPPVANR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI SHREAFSAAA KNWAHFPHIH  180
FGLMPDQPVK KPNACQQEGE DGLMKDGFLA PPNLGVSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-90YABBY family protein