PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159677.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 730aa MW: 84288.8 Da PI: 8.7741

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159677.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.6	3.2e-21	35	127	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAke+GF+vr +++++++ + + + Cs+eg+++e++++ ++++rr+r+++r+gCka++++kk ++g ++v+ +el H+H l+ XP_019159677.1 35 DFYQAYAKEAGFDVRHGSKRRNRMG-DVSIKYMLCSREGYKAERNEAtntaNKRKRRRRVSNRIGCKARMVMKKCDTGGYKVHAIELRHTHCLC 127 6***************9999555.58889999*****99999998999999********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MQIQEDGAKY WTPTTQNEKT PYEGQRFETI DIGIDFYQAY AKEAGFDVRH GSKRRNRMGD 60 VSIKYMLCSR EGYKAERNEA TNTANKRKRR RRVSNRIGCK ARMVMKKCDT GGYKVHAIEL 120 RHTHCLCSDK AKPFLKINRQ LDIGHKTFLA HCAKANIGPT KAFRLFKQMV GSFTDLGATC 180 IDFCNFRRDL LAYIAEADAQ MVIEDMFKRK QENPDFYFDY DIDEEAQLSR IFWADAESRR 240 NYACFGDVMS FDATYSTNRY KLVFVPFTGV DNHKRSITFG AGLIAKEDVE SYEWLLKNFK 300 TAMEYAPRCT ITDQDPALKI VVPQTMPTTR HRFCMWHITT KVGEKVGAAL WHNADFKKAL 360 NSIIWDETLT TDEFERKWEQ VMKDYNLEEH RWFTQLYEAR ASWIPAYFND IPMGGLLRTT 420 SRSESENSYF GKFTNHHCSL VEFMAQYNSA IGEQRHNQAK LIAENEGSYP ETKTPLSIEK 480 NAATVYTINI FYEVQTEIWE ASFTNHIIHK HNVGDICKYK VEDTDGKMFE VTETPQAEEI 540 ECACKKFNRV GILCRHVLLV MKTNGYESIP RKYIVPRWTR DACAHPLHNV PWARRTNIPT 600 SNETTKVANQ LWTEFYNCMG LVNGWPDKMD QMLATLQQLK KDLEKERQQT ENGANNASVL 660 ERLVGSTKPG DIQIKPPKVA KNKGSGKRLK SNREKAMSNT QKKKERTCNT CGLPGHNSRT 720 CPDKLASDEV

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MQIQEDGAKY WTPTTQNEKT PYEGQRFETI DIGIDFYQAY AKEAGFDVRH GSKRRNRMGD  60
VSIKYMLCSR EGYKAERNEA TNTANKRKRR RRVSNRIGCK ARMVMKKCDT GGYKVHAIEL  120
RHTHCLCSDK AKPFLKINRQ LDIGHKTFLA HCAKANIGPT KAFRLFKQMV GSFTDLGATC  180
IDFCNFRRDL LAYIAEADAQ MVIEDMFKRK QENPDFYFDY DIDEEAQLSR IFWADAESRR  240
NYACFGDVMS FDATYSTNRY KLVFVPFTGV DNHKRSITFG AGLIAKEDVE SYEWLLKNFK  300
TAMEYAPRCT ITDQDPALKI VVPQTMPTTR HRFCMWHITT KVGEKVGAAL WHNADFKKAL  360
NSIIWDETLT TDEFERKWEQ VMKDYNLEEH RWFTQLYEAR ASWIPAYFND IPMGGLLRTT  420
SRSESENSYF GKFTNHHCSL VEFMAQYNSA IGEQRHNQAK LIAENEGSYP ETKTPLSIEK  480
NAATVYTINI FYEVQTEIWE ASFTNHIIHK HNVGDICKYK VEDTDGKMFE VTETPQAEEI  540
ECACKKFNRV GILCRHVLLV MKTNGYESIP RKYIVPRWTR DACAHPLHNV PWARRTNIPT  600
SNETTKVANQ LWTEFYNCMG LVNGWPDKMD QMLATLQQLK KDLEKERQQT ENGANNASVL  660
ERLVGSTKPG DIQIKPPKVA KNKGSGKRLK SNREKAMSNT QKKKERTCNT CGLPGHNSRT  720
CPDKLASDEV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	91	KRKRRR
2	86	92	KRKRRRR
3	87	91	RKRRR
4	88	93	KRRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-88	FAR1 family protein