PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159690.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 586aa MW: 67080.3 Da PI: 8.4993

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159690.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.2	1.8e-15	30	107	10	91
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 GFsvr+sk+++++ +++++++ f Csk g+++++ k ++ rtgC a ++ +++++ w v+k e+ HnHel+p XP_019159690.1 30 PGFSVRRSKQRYNSATKTMKTKMFHCSKDGFKRSTGKG----CYSKIDGRTGCGAFVQFDLHENEMWIVSKHEKLHNHELVP 107 5******************************99887....88999*******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence
MYDSIAQQDV AETEHTTDPV GVVDTNDANP GFSVRRSKQR YNSATKTMKT KMFHCSKDGF 60 KRSTGKGCYS KIDGRTGCGA FVQFDLHENE MWIVSKHEKL HNHELVPPSK SYLLRSHRML 120 SRNHISYLTD LKSSGVSVAD GVRFLKTQSG GSPLVGFTSR DAYNSLCTDA LNRLDGTDSN 180 TLIEIFKRRQ SSERDFYFDF EVDLESSPQS IMTDQCAAMA AAIVQVFLSS RHRLCIWHIG 240 ENSKKHIKGL RNQKYFLDIF NCLLKYTDTE AEFEFYWTRE KWCPAFNKDY FSGGILSSQR 300 SETTNHSISR RLSKTSGLCD FYNSFVGVIS EWRSRENGED VRCSQGVPTM VMDNVKILLH 360 AREFYTIEIY YLFEEQFLKG GSCYQECVML EDGVYKYHVW RPDVDTIRHE VIFNSRQMDI 420 GCSCKLFTEL GILCCHCLRI LNVHCVSEVP EKYILKRWTK KVVEVDNVDI MSRVDSGNGA 480 SSVWLLEIIR KFQRLAVYSQ ENIEGRKICE EAIADAKRRL EAEYGGSLFE DCDIGSTSGV 540 IKDPSTRRMK GLRNRRVSSV ISKKYNKARG RKHLANMVAS KIKSAV

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence

MYDSIAQQDV AETEHTTDPV GVVDTNDANP GFSVRRSKQR YNSATKTMKT KMFHCSKDGF  60
KRSTGKGCYS KIDGRTGCGA FVQFDLHENE MWIVSKHEKL HNHELVPPSK SYLLRSHRML  120
SRNHISYLTD LKSSGVSVAD GVRFLKTQSG GSPLVGFTSR DAYNSLCTDA LNRLDGTDSN  180
TLIEIFKRRQ SSERDFYFDF EVDLESSPQS IMTDQCAAMA AAIVQVFLSS RHRLCIWHIG  240
ENSKKHIKGL RNQKYFLDIF NCLLKYTDTE AEFEFYWTRE KWCPAFNKDY FSGGILSSQR  300
SETTNHSISR RLSKTSGLCD FYNSFVGVIS EWRSRENGED VRCSQGVPTM VMDNVKILLH  360
AREFYTIEIY YLFEEQFLKG GSCYQECVML EDGVYKYHVW RPDVDTIRHE VIFNSRQMDI  420
GCSCKLFTEL GILCCHCLRI LNVHCVSEVP EKYILKRWTK KVVEVDNVDI MSRVDSGNGA  480
SSVWLLEIIR KFQRLAVYSQ ENIEGRKICE EAIADAKRRL EAEYGGSLFE DCDIGSTSGV  540
IKDPSTRRMK GLRNRRVSSV ISKKYNKARG RKHLANMVAS KIKSAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	2e-28	FAR1 family protein