PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019159698.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 192aa    MW: 21185.3 Da    PI: 8.9777
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019159698.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601315.1e-41261261101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++C+++pyf  ++p+kfa+vhk+FGasnv+kl+ ++p  +r da++slvyeA++r+rdPvyG++g i++lqqql+ l++el+
  XP_019159698.1  26 PCAACKLLRRRCVEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLIMEVPVRQRADAANSLVYEANVRLRDPVYGCMGAISALQQQLQYLQSELN 120
                     7********************************************************************************************** PP

          DUF260  96 llkeel 101
                     ++k++l
  XP_019159698.1 121 SVKAQL 126
                     *99885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MEMEKKLKTE TEASPSQTAA LNTVTPCAAC KLLRRRCVEE CPFSPYFSPH EPHKFAAVHK  60
VFGASNVSKL IMEVPVRQRA DAANSLVYEA NVRLRDPVYG CMGAISALQQ QLQYLQSELN  120
SVKAQLLRYK YRQVVVNGGT QTPPVLMNSM AVSVAEPPQA PPHSSPSLFT TSSNMASFSS  180
VMQNNNNISF FQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.18e-63LBD family protein