PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159844.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 183aa MW: 19923.3 Da PI: 9.7418

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159844.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F++ L H +H XP_019159844.1 47 FQCKTCDKKFPSFQALGGHRASH 69 89**********99999998887 PP
2	zf-C2H2	12	0.00064	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H XP_019159844.1 92 HRCSICGLEFAMGQALGGHMRRH 114 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence
MTMLMKRSRE YAGVEAEAMA NCLMLLAHVG RNSSSSPPSA SKDLCSFQCK TCDKKFPSFQ 60 ALGGHRASHK KPKLVAPAPG EQESSPEKSK MHRCSICGLE FAMGQALGGH MRRHRAAMMK 120 EGFENPPAAI PMAMAIPVLK RTTSSKRIFG FGLNLDLNLT PAENDDLKIE STTPATPVLR 180 CFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	2e-35	C2H2 family protein