PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019159845.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 176aa MW: 19646.5 Da PI: 9.065

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019159845.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00085	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k F++ L H +H XP_019159845.1 45 FECKTCQKKFKSFQALGGHRASH 67 89**********99999998887 PP
2	zf-C2H2	13.1	0.0003	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F L +H+r+H XP_019159845.1 84 HECPVCGLEFGLGQALGVHMRKH 106 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence
MTLKRSREEV AAGAEAMAMA NCLELLSRPA GGGGGEKTPP SEWEFECKTC QKKFKSFQAL 60 GGHRASHKRP KIDNNNVVNI KKRHECPVCG LEFGLGQALG VHMRKHRSDQ SHSDDKKSKS 120 PDLLTVTTVK NEEHSADDGI KKKEKQQVLF DLNFTLLEND SIVHRRLVPI TLDLFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59820.1	7e-23	C2H2 family protein