PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019159859.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 298aa    MW: 34179.7 Da    PI: 7.6953
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019159859.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.7e-1791136148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E+ l+++++ ++G++ W++Ia++++ gRt++++k++w++++
   XP_019159859.1  91 RGKITPQEQRLILQLHSKWGNR-WSKIAQKLP-GRTDNEIKNYWRTHM 136
                      8999******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MDTATINFYQ NGTGRDDEDD DDEERSMDRT RRCSAGSLRE HVRRSAVGFS GQSFRFAKVL  60
VGESQNWIGL KRSGKSCRLR WVNYLQPGLK RGKITPQEQR LILQLHSKWG NRWSKIAQKL  120
PGRTDNEIKN YWRTHMRKKA NEDRANKCAS SSSSSSLSNN SSSSSGASSS PPAVDSRPIP  180
ATNERNFYDT GGIIFEDETK TTPPQQQQEE EEIEKKMDHH HQQQQQVCSS SMDDIWKDME  240
LWAEQQKGGC TMWNYWSEWV WTTTCSSSSN NRMCPPPPPP ASTDRLCFFD NQDYICTI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.25e-46MYB_related family protein