PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019159915.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 112aa    MW: 12567.9 Da    PI: 4.8671
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019159915.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.72.8e-1148110167
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 
                     ++Yn+YA +vGF vr+ k+++++ ++++ ++ f Csk g++++++k       ++   rtgC a ++
  XP_019159915.1  48 DMYNDYAFRVGFCVRRGKQRYNSATKTMETKMFHCSKDGFKRSTRKG----CYSKIDGRTGCGAFVQ 110
                     58****************************************98877....8899999****99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    
MYDSIAQQDV AETEHTTDPV GVVDTEDANP ADQDLVGMSV CSVDEAYDMY NDYAFRVGFC  60
VRRGKQRYNS ATKTMETKMF HCSKDGFKRS TRKGCYSKID GRTGCGAFVQ FD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.12e-12FAR1 family protein