PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019160089.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 312aa    MW: 35730 Da    PI: 6.4224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019160089.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-182976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
   XP_019160089.1 29 RGPWTLEEDTLLIKYIAAHGEGRWNALAKCAGLRRTGKSCRLRWLNYL 76
                     89********************************************97 PP
2Myb_DNA-binding51.62.1e-1682125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_019160089.1  82 RGNLTPQEQILILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 125
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MMVSKSGAIQ SLSNNNSCNE EERFGELRRG PWTLEEDTLL IKYIAAHGEG RWNALAKCAG  60
LRRTGKSCRL RWLNYLKPDI KRGNLTPQEQ ILILELHSKW GNRWSKIAQH LPGRTDNEIK  120
NYWRTRVQKQ ARQLKIDSNS KKFIEAVKRF WMPRLIEKME QTISTTTSSF ISSPSSSSSI  180
STMEKQQSPP INSLPSPHPT HQTYLPSSPT LQEPPKTDNS ENENLNICST DSFQLHHDDD  240
CYHVEIMGNS CYGGEEAFGH PAMSAFESRD ISMLECQLAA PDDWFSNDVA DSLWNIDESW  300
QYRKLEDFGD LS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-91MYB family protein