PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160100.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 177aa MW: 20066.4 Da PI: 9.554

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160100.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.2e-16	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++lvd+++++G g W+ ++ g+ R+ k+c++rw ++l XP_019160100.1 17 KGAWSKQEDQKLVDYIRKHGEGGWRDLPKAAGLLRCSKSCRLRWMNHL 64 79****************************99**********97 PP
2	Myb_DNA-binding	45.1	2.4e-14	70	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ +E++l+++++++lG + W++Ia +++ gRt++++ ++w+++ XP_019160100.1 70 RGNFGDDEEDLIIKLHALLGDR-WSLIAGRLP-GRTDEEVENYWNSH 114 899***************99.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MRKASCDHSH HHHEINKGAW SKQEDQKLVD YIRKHGEGGW RDLPKAAGLL RCSKSCRLRW 60 MNHLKQTAKR GNFGDDEEDL IIKLHALLGD RWSLIAGRLP GRTDEEVENY WNSHIRKKLV 120 DMGIDPNNHR VSCTYPRPHN SAGVAQTSAG KSRVTSPEKQ RIESDGEVSD AGSSNVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-64	MYB family protein