PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019160133.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 231aa    MW: 25912.6 Da    PI: 8.8584
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019160133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1870124256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+ n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  XP_019160133.1  70 RKKLRLTKEQSLLLEESFRLNHTLNPKQKEVLAMQLRLKPRQVEVWFQNRRARSK 124
                     78889************************************************98 PP
2HD-ZIP_I/II113.51.3e-3670158189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq+ lLEesF+ +++L+p++K+ la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  XP_019160133.1  70 RKKLRLTKEQSLLLEESFRLNHTLNPKQKEVLAMQLRLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 158
                     69*************************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MADMPGSSTC LDLTISIPGS SSSSSGGECG MRDLDINQVP SGENIEGESM MMMIEEEDDQ  60
SSINGGVHPR KKLRLTKEQS LLLEESFRLN HTLNPKQKEV LAMQLRLKPR QVEVWFQNRR  120
ARSKLKQTEM ECEYLKRWFG SLTEQNRRLQ REVEELRAKK VGPPTVLSPH SRQPLPASTL  180
TMCPRCERVS TNTTTTTTVR VVDKGGPTTQ PTNLSAKTLQ LLHPRHPSAA C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127RRARSKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.19e-69HD-ZIP family protein