PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160244.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 334aa MW: 38017.7 Da PI: 5.482

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.9e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl XP_019160244.1 14 KGPWSPEEDAKLKAYIEKQGTGnNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	39	1.8e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_019160244.1 69 GGFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MGRAPCCDKA SVKKGPWSPE EDAKLKAYIE KQGTGNNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 RKQSQMNRLL LAGHHQEADN KETNGVSEEN PFLQNLSNSA LERLQLHMQL QGLQNPFSLY 180 NNNNPQALWP GNKITPFQPK MADEPMNEQE QMRMLAAQPE YSSKMNELES CMNNNDGSSS 240 LGQENNNSGE IQAAIPGFTQ SEIDSLLING GENHQISDFD YCFKQVMEGS KERLEWWNTE 300 FDTNSWVDPP LLPPPPQQEG IMYEDYASLG YNNM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-90	MYB family protein