PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019160401.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 316aa    MW: 35330 Da    PI: 9.0958
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019160401.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed+ll + ++ +G g+W++ +++ g+ R++k+c++rw +yl
   XP_019160401.1 14 KGPWSAKEDLLLTNHIQHHGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding56.75.6e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
   XP_019160401.1  67 RGNFSQEEEDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MGRAPCCSKE GLRKGPWSAK EDLLLTNHIQ HHGEGQWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPGIKRGNF SQEEEDLIVR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLLKKLKSAG  120
IEPKPRHSKD SKKKPAKPRP NPQKLTANTK KKHKKARNDE QSPRQDSDQT ATAPEKRTKV  180
YAPKPIRLSP SPAFSRNHSL EDVAGSVSSS SGEVDNKAVV LQGTTAEPPP PPFIPWHLYE  240
LGGDVDFCDQ ILDGCDLSSP KCSGPTSDGL LEKVYDEYLH LLSENCFEPL TDDCLCDYPF  300
VDYNVAPTSS NNSSLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-64MYB family protein