PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019160423.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 310aa    MW: 34267.1 Da    PI: 6.3241
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019160423.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20120170155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+++l+g
  XP_019160423.1 120 SKYRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAALQLRG 170
                     89********.**********72....45*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MFSGPVKYKY SEHRRQTRMF GPAPAPAGGF SGKRKLSEVN GGLPRVVRIS VTDDDATDSS  60
GDEGEPEPSG GRRRVKKYVN EVTIERCGGD SYGKGKFDGV LKRRKAAAPP LKKKKVNNVS  120
KYRGVRQRPW GKWAAEIRDP LRRVRLWLGT YDTAEEAAMV YDNAALQLRG PHALTNFSVP  180
PATVEKPAES LSGYNSGEES HASRRSPNSV FLFNSEADSE SIFAHPNDVV IPSENFSSFS  240
PFPDHWFENP IHEPGLFHEP GFPDEIFGES CTEMFIGSSH DFGLGSSTSP ADEYFQDFED  300
IFGSDPLVAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
173115RRVKKYVNEVTIERCGGDSYGKGKFDGVLKRRKAAAPPLKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.14e-41ERF family protein