PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160424.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 331aa MW: 37237.7 Da PI: 7.5181

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160424.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.6e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ + +G g+W+++++ g+ R++k+c++rw +yl XP_019160424.1 13 RGLWSPEEDEKLIKHLATHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	51.3	2.7e-16	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T +E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ XP_019160424.1 66 RGSFTDQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MGHHCCGKQK VKRGLWSPEE DEKLIKHLAT HGHGCWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGSFT DQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLAQGL 120 DPNTHNLLSS SPAKNPKINK NNKPINSQHF TVDQNSPPKD ELLHIPLDFK ASINAALTCI 180 PSANNEPHKH YYPLKFKYGP TGGYQYQNPS MGFGTSCSSV ESTSNNLSFS PSSSSLNPGL 240 GAMNVENSMW GTSPFEPQVG PDRFVHQQQQ QEMYKVNSTE FCSNNVQNME MVNTFDDSSD 300 FDFDFGDDSA LLPLAVYCDA NSMDQLTWDN C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	2e-82	MYB family protein