PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160500.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 261aa MW: 29416.3 Da PI: 5.6211

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.6	1.6e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ + G +W++ ++ g++R++k+c++rw +yl XP_019160500.1 14 KGPWTAEEDKKLITFILSNGQCCWRALPKLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.7	9.6e-17	70	111	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++E++l +d+++ lG++ W++Ia++++ gRt++++k++w+++ XP_019160500.1 70 LSQDEEQLVIDLHASLGNR-WSKIASKLP-GRTDNEIKNHWNTH 111 589**************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MGRQPCCDKL GVKKGPWTAE EDKKLITFIL SNGQCCWRAL PKLAGLRRCG KSCRLRWTNY 60 LRPDLKRGLL SQDEEQLVID LHASLGNRWS KIASKLPGRT DNEIKNHWNT HIKKKLIKMG 120 IDPVTHEPLI KDTTDSTSDK GNGQLQVQVV PEGTPPTVPN LISEDLNSSC STSENSSITS 180 TNDEFQRVLD TMSDNDPLLS SLLENNAPPV DLTWNLSDDH QMIFENLTIP KLDENFAWLM 240 DHQDFGIHDF GYECSNVATL M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22680.1	3e-93	MYB family protein