PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160505.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 370aa MW: 40951.2 Da PI: 6.6346

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160505.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	210	256	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h + Er+RR+++N++f Lr+ +P+ K++Ka+ L Av YI++L XP_019160505.1 210 RNHVASERQRREKLNHRFYALRSAVPNV-----SKMDKASLLADAVAYINEL 256 6799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MSSSLPASTL RNRLQFIVDN GSPELWLYAI FWQATKGGSG GDGVVLSWGD GHFRGGKGAD 60 TDRNVDGNGE WFYLSSVAKC FVAAEDLLIR TFDSGSYAWL SGDDFGVGFY DCGRVKEAYM 120 HGIKTLVFFS TSYGVVELGS TEIIQQDGEL LRHFQSLFTF NAAVSLPVTN QSPDSSNSDF 180 LDIQPTTCGG NLGRRRKTTS SSSGRDQMTR NHVASERQRR EKLNHRFYAL RSAVPNVSKM 240 DKASLLADAV AYINELKAKI DDLEAKVGSR AENPNPRKRI RRETTTMIIQ EVEVKIIGEE 300 AIIRVQSPDV NFPAARLMNV LRELELGIHH ATVSCVAELM LQDVVIRVSG GSQEEALKAI 360 ILQRLQTYQD

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MSSSLPASTL RNRLQFIVDN GSPELWLYAI FWQATKGGSG GDGVVLSWGD GHFRGGKGAD  60
TDRNVDGNGE WFYLSSVAKC FVAAEDLLIR TFDSGSYAWL SGDDFGVGFY DCGRVKEAYM  120
HGIKTLVFFS TSYGVVELGS TEIIQQDGEL LRHFQSLFTF NAAVSLPVTN QSPDSSNSDF  180
LDIQPTTCGG NLGRRRKTTS SSSGRDQMTR NHVASERQRR EKLNHRFYAL RSAVPNVSKM  240
DKASLLADAV AYINELKAKI DDLEAKVGSR AENPNPRKRI RRETTTMIIQ EVEVKIIGEE  300
AIIRVQSPDV NFPAARLMNV LRELELGIHH ATVSCVAELM LQDVVIRVSG GSQEEALKAI  360
ILQRLQTYQD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	220	RNHVASERQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	6e-58	bHLH family protein